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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
gene expression
4
target gene predictions
3
accessible chromatin
3
chromatin state
2
differential activity
1
binding sites
1
caQTL
1
eQTL
1
histone modifications
Annotation Category
4
Target gene links
2
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
single cell RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
21
heart
21
neural progenitor cell
21
stomach
20
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
17
adrenal gland
17
lung
17
small intestine
16
kidney
16
muscle of arm
16
placenta
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
liver
13
muscle of back
12
B cell
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
10
right kidney
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
gastric cancer cell
9
left kidney
9
pericyte cell
9
pituitary stalk
9
renal pelvis
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
endothelial cell
8
heart left ventricle
8
hepatocyte
8
induced pluripotent stem cell
8
keratinocyte
8
lymphocyte
8
neuroblastoma cell
8
pancreatic ductal cell
8
renal cortex interstitium
8
spinal cord
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
pancreatic acinar cell
7
pancreatic delta cell
7
psoas muscle
6
Chondroid Chordoma
6
dendritic cell
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
liposarcoma
6
mononuclear cell
6
natural killer cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
6
pancreatic alpha cell
6
pancreatic beta cell
6
sigmoid colon
6
spleen
6
trophoblast cell
5
CyT49
5
EndoC_BH1
5
T cell
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
body of pancreas
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
macrophage
5
mammary gland epithelial cell
5
melanoma cell
5
mesenchymal stem cell
5
muscle of trunk
5
osteosarcoma
5
smooth muscle cell
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
squamous cell lung carcinoma
3
22Rv1
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic ductal adenocarcinoma
3
pancreatic endothelial cell
3
pancreatic quiescent stellate cell
3
pancreatic stellate cell
3
regulatory T cell
3
retina
3
rhabdomyosarcoma cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Ammon's horn
2
B Cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
Organ
5
connective tissue
2
epithelium
2
kidney
Life stage
3
adult
1
embryonic
Date released
2
September, 2022
2
September, 2023
1
February, 2021
1
March, 2020
1
May, 2021
Software used
2
deseq2
2
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
2
KPMP
1
Jesse Engreitz, Stanford University
Project
5
AMP
2
KPMP
RFA
5
AMP
2
KPMP
Showing 7 of 7 results
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Download
FileSet
DSR617LAV
released
Annotation file set
: Differential activity annotation of Cortical Thick Ascending Limb Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR168SOF
released
Annotation file set
: Differential activity annotation of Cortical Thick Ascending Limb Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP