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Citing CMDGA
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Annotation type
8
accessible chromatin
8
gene expression
1
binding sites
1
differential activity
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
RNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
86
monocyte
30
CD8-positive, alpha-beta T cell
16
neural progenitor cell
11
breast cancer cell
9
gastric cancer cell
8
Rhabdomyosarcoma
8
fibroblast
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
hepatocyte
6
liposarcoma
6
neuroblastoma cell line
6
pancreatic ductal cell
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
melanoma cell
5
osteosarcoma
5
pancreatic acinar cell
4
brain
4
cardiac muscle cell
4
keratinocyte
4
macrophage
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
rhabdomyosarcoma cell
3
EndoC_BH1
3
Ewing sarcoma
3
T cell
3
acute myeloid leukemia
3
diffuse large B-cell lymphoma
3
endothelial cell
3
enterocyte
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart
3
heart left ventricle
3
hepatic stellate cell
3
kidney
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
myofibroblast cell
3
neuronal stem cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic ductal adenocarcinoma
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
pancreatic stellate cell
2
cardiac fibroblast
2
muscle of leg
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B cell
2
B-lymphocyte
2
COLO205
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HS-SY-2 cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF-7
2
MIN6
2
Mantle cell lymphoma
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
RS4-11 cell
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rh-4 cell
2
Schwann cell
2
T Cell
Th1 cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
acute myeloid leukemia cell
2
adipocyte
2
basal cell
2
bronchial epithelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
coronary artery
2
embryonic stem cell
2
endometriosis
2
epithelial cell of esophagus
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
goblet cell
2
hematopoietic cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
islet of Langerhans
2
leukemic stem cell
2
mammary gland epithelial cell
2
mantle cell lymphoma cell
2
mast cell
2
medulloblastoma cell line
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
natural killer cell
2
occipital lobe
2
osteoblast
2
pancreas
2
pancreatic cell line
2
pancreatic endocrine cell
2
placenta
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
putamen
2
retina
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
smooth muscle cell
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
synovial sarcoma cell
2
tibial artery
2
tibial nerve
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
Organ
2
epithelium
2
pancreas
Date released
1
February, 2021
1
February, 2023
1
May, 2020
Software used
1
deltasvm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
community
award.rfa!
community
biosample_term_name!
Th1 cell
Showing 3 of 3 results
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Download
FileSet
DSR309JFA
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siCALCOCO2 mediated knockdown
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP