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Schema
Citing CMDGA
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Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
0
differential activity
Annotation Category
2
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
16
adrenal gland
16
brain
16
lung
16
muscle of arm
16
small intestine
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
12
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
induced pluripotent stem cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
endothelial cell
7
lymphocyte
7
pancreatic delta cell
7
psoas muscle
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
heart left ventricle
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic ductal cell
6
sigmoid colon
5
body of pancreas
5
gastrocnemius medialis
5
keratinocyte
5
muscle of trunk
5
natural killer cell
5
ovary
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
EndoC_BH1
4
HUES8
4
T cell
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
heart right ventricle
4
hepatocyte
4
iPSC derived cell line
4
mammary gland epithelial cell
4
neural progenitor cell
4
pancreas
4
pancreatic stellate cell
4
regulatory T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
aorta
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
macrophage
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
Glomerular Capillary Endothelial Cell
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF 10A cell
2
MM.1S
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
NAMALWA cell
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
OCI-LY7
2
PC-9
2
Panc1
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
Organ
2
lymph node
Life stage
1
adult
Date released
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_type!
eQTL
annotation_type_category!
pCHi-C
Showing 2 of 2 results
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Download
FileSet
DSR127KNA
released
Annotation file set
: Target gene predictions for BSS01274 MM.1S from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064TPU
released
Annotation file set
: enhancer-gene predicton of MM.1S-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP