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Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
8
gene expression
4
candidate regulatory elements
3
differential activity
2
binding sites
2
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
Gene expression levels
1
Target gene links
Annotation type Category
3
RNA-seq
1
HiC
Available data
1
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
52
HeLa-S3
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
10
pituitary stalk
9
pericyte cell
8
induced pluripotent stem cell
7
GM12878
7
H9
7
endothelial cell
6
dendritic cell
6
lymphocyte
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
pancreatic ductal cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
4
CyT49
4
EndoC_BH1
4
HUES8
4
adipocyte
4
fibroblast
4
iPSC derived cell line
4
liver
4
macrophage
4
pancreatic stellate cell
4
psoas muscle
3
CD4-positive, alpha-beta T cell
3
adrenal gland
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
keratinocyte
3
monocyte
3
pancreas
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
thymus
3
type B pancreatic cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HCT116
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF 10A cell
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
T Cell
2
T-cell
2
THP-1
2
Transitional Principal-Intercalated Cell
2
U937
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
aorta
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
heart left ventricle
2
heart right ventricle
2
hepatocyte
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
mesendoderm
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
sigmoid colon
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
trophoblast cell
2
type II pneumocyte
1
A549
1
A673
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
aorta wall
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
breast epithelium
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
Organ
4
epithelium
4
pancreas
Date released
September, 2022
2
March, 2023
1
February, 2023
1
March, 2020
Software used
1
hiccups
Lab
2
AMP-T2D consortium
2
Anna Gloyn, Oxford
Project
2
AMP
2
community
RFA
2
AMP
2
community
biosample_term_name!
H1-hESC
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR309JFA
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siCALCOCO2 mediated knockdown
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273DTH
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siRNA mediated knockdown
Lab:
Anna Gloyn, Oxford
Project:
community
FileSet
DSR163KQO
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following CRISPR/Cas9 knockout
Lab:
Anna Gloyn, Oxford
Project:
community
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP