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Schema
Citing CMDGA
Clear Filters
Annotation type
11
accessible chromatin
8
gene expression
4
candidate regulatory elements
4
variant allelic effects
3
chromatin state
3
target gene predictions
1
binding sites
1
differential activity
1
histone modifications
Annotation Category
4
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
1
tissue
Biosample term
2
cardiac fibroblast
2
muscle of leg
2
EndoC_BH1
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
coronary artery
2
heart
2
heart left ventricle
2
right atrium auricular region
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
adipose tissue
1
aorta wall
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hepatocyte
1
islet of Langerhans
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
liver
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
naive t cell
1
occipital lobe
1
pancreas
1
pons
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
superior temporal gyrus
1
thoracic aorta
1
visceral abdominal adipose tissue
Organ
2
epithelium
2
pancreas
1
blood vessel
1
vasculature
Date released
4
May, 2020
1
February, 2023
Software used
4
deltasvm
Lab
5
AMP-T2D consortium
2
Anna Gloyn, Oxford
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR309JFA
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siCALCOCO2 mediated knockdown
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR727LWQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in thoracic aorta ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181VXG
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835LQY
released
Annotation file set
: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP