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Schema
Citing CMDGA
Clear Filters
Annotation type
21
accessible chromatin
17
candidate regulatory elements
9
chromatin state
9
target gene predictions
3
gene expression
1
eQTL
Annotation Category
3
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
RNA-seq
2
scRNA-seq
Available data
4
tsv
1
txt
File set status
4
released
Genome assembly (visualization)
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
16
epithelial cell of proximal tubule
14
monocyte
13
glomerular endothelial cell
13
hepatocyte
10
subcutaneous adipose tissue
9
islet of Langerhans
7
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
adipose tissue
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
regulatory T cell
4
T-helper 1 cell
4
T-helper 17 cell
4
bone tissue
4
endothelial cell of hepatic sinusoid
4
glomerular visceral epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
omental fat pad
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
body of pancreas
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney interstitial cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
liver
3
mesangial cell
3
right atrium auricular region
3
tibial nerve
2
Ammon's horn
2
C1 segment of cervical spinal cord
2
Kupffer cell
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
ascending aorta
2
blood
2
cartilage tissue
2
caudate nucleus
2
cerebellum
2
cerebellum (Hemisphere)
2
coronary artery
2
frontal cortex
2
gamma-delta T cell
2
gastrocnemius medialis(Muscle - Skeletal)
2
hypothalamus
2
kidney inner medulla collecting duct intercalated cell
2
left ventricle myocardium
2
macrophage
2
natural killer cell
2
nucleus accumbens
2
putamen
2
retina
2
right lobe of liver
2
smooth muscle cell of the coronary artery
2
substantia nigra
2
tibial artery
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
Schwann cell
1
activated pancreatic stellate cell
1
adipocyte
1
adrenal gland
1
alpha-beta T cell
1
alternatively activated macrophage
1
bladder
1
breast - mammary tissue
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
colon - sigmoid
1
colon - transverse
1
cytotoxic T cell
1
dendritic cell
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
erythroid lineage cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
heart
1
heart left ventricle
1
hepatic stellate cell
1
inflammatory macrophage
1
kidney - cortex
1
kidney - medulla
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney tubule cell
1
lung
1
mast cell
1
mature B cell
1
mesenchymal stem cell of adipose
1
minor salivary gland
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
nephron tubule
1
neutrophil
1
osteoblast
1
ovary
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic epsilon cell
1
pancreatic polypeptide-secreting cell
1
pituitary
1
plasma cell
1
progenitor cell
1
prostate
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortical epithelial cell
1
renal glomerulus
1
renal principal cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
skeletal muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
spleen
1
stomach
1
synovial joint
1
testis
Organ
2
eye
Life stage
4
adult
Date released
2
February, 2020
1
August, 2021
1
February, 2021
Software used
3
r
1
qTLtools
1
seurat
Lab
3
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
4
AMP
RFA
3
AMP
1
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR962TNF
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for natural killer cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR725TSR
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver NK-likecells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR010VOR
released
Annotation file set
: cis-eQTL of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180OYG
released
Annotation file set
: Gene expression summary of TPM of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP