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Schema
Citing CMDGA
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Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
4
gene expression
1
binding sites
1
differential activity
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
4
Gene expression levels
1
Genetic variant effects
Annotation type Category
4
RNA-seq
1
snRNA-seq
Available data
3
tsv
File set status
5
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
1
in vitro differentiated cells
1
primary cell
Biosample term
11
subcutaneous adipose tissue
7
adipose tissue
5
mesangial cell
4
bone tissue
4
omental fat pad
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Fibroblast
3
Mesangial Cell
3
adult endothelial progenitor cell
3
visceral abdominal adipose tissue
2
adipocyte
2
articular chondrocyte
2
cartilage tissue
2
fibroblast
2
mesenchymal stem cell
2
osteoblast
2
pancreatic stellate cell
1
activated pancreatic stellate cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
fat cell
1
hepatic stellate cell
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
Organ
5
connective tissue
3
adipose tissue
Life stage
3
adult
Date released
3
February, 2021
1
February, 2024
1
January, 2022
Software used
4
r
1
deeptools
1
qTLtools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_term_name!
cerebellum
Showing 5 of 5 results
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Download
FileSet
DSR631EVX
released
Annotation file set
: adipose visceral eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR825KTA
released
Annotation file set
: Gene expression TPM of developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [RNA_seq_Whole]
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR477UYX
released
Annotation file set
: Gene expression TPM of developmental origins define epigenomic differences between subcutaneous and visceral adipocytes of GSE110821 [RNA-Seq]
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP