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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
10
gene expression
7
target gene predictions
3
binding sites
2
caQTL
2
histone modifications
2
variant allelic effects
1
eQTL
Annotation Category
3
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
RNA-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
90
monocyte
30
CD8-positive, alpha-beta T cell
16
neural progenitor cell
15
islet of Langerhans
11
breast cancer cell
11
macrophage
10
fibroblast
9
gastric cancer cell
9
liver
9
lymphoblastoid cell line
8
Rhabdomyosarcoma
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
subcutaneous adipose tissue
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
brain
6
hESC cell
6
hepatocyte
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T cell
5
T-cell acute lymphoblastic leukemia
5
adipose tissue
5
melanoma cell
5
osteosarcoma
5
putamen
4
cardiac muscle cell
4
caudate nucleus
4
coronary artery
4
endothelial cell
4
heart left ventricle
4
keratinocyte
4
kidney
4
rhabdomyosarcoma cell
4
right atrium auricular region
4
substantia nigra
4
tibial artery
4
tibial nerve
3
Ewing sarcoma
3
acute myeloid leukemia
3
amygdala
3
blood cell
3
cartilage tissue
3
cerebellum
3
diffuse large B-cell lymphoma
3
enterocyte
3
esophageal squamous cell carcinoma
3
frontal cortex
3
glioblastoma cell
3
glioma cell
3
heart
3
hepatic stellate cell
3
hypothalamus
3
lymphoblast
3
mammary epithelial cell
3
myofibroblast cell
3
natural killer cell
3
neuronal stem cell
3
nucleus accumbens
3
pancreas
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
placenta
3
prostate gland
3
regulatory T cell
3
retina
3
skeletal muscle tissue
3
skin of body
3
smooth muscle cell
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
B-lymphocyte
2
COLO205
2
EndoC_BH1
2
HS-SY-2 cell
2
Jurkat
2
MCF-7
2
MIN6
2
Mantle cell lymphoma
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Rh-4 cell
2
Schwann cell
2
Th1 cell
2
acute myeloid leukemia cell
2
adipocyte
2
anterior cingulate cortex
2
articular chondrocyte
2
ascending aorta
2
basal cell
2
blood
2
body of pancreas
2
bronchial epithelial cell
2
cerebellum (Hemisphere)
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
cortex of kidney
2
embryonic stem cell
2
endometriosis
2
epithelial cell of esophagus
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
goblet cell
2
hematopoietic cell
2
iPSC derived cell line
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
layer of hippocampus
2
leukemic stem cell
2
mammary gland epithelial cell
2
mantle cell lymphoma cell
2
mast cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
occipital lobe
2
omental fat pad
2
osteoblast
2
pancreatic acinar cell
2
pancreatic cell line
2
pancreatic endocrine cell
2
pituitary gland
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
spinal cord
2
stomach
2
superior temporal gyrus
2
synovial sarcoma cell
2
testis
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
ARH-77 cell
1
AU565 cell
1
Adipose SGBS cell line (adipocyte)
1
Adipose stromal cell
1
Ammon's horn
1
AsPC-1 cell
1
B-cell lymphoma cell
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BG03
1
BGC-823 cell
1
BHY cell
1
BICR 31
1
BJ cell
1
BT-474 cell
1
BT-549 cell
1
Barrett's epithelial cell line
1
Barrett's esophagus
1
Brodmann (1909) area 9
1
BxPC-3 cell
1
C1 segment of cervical spinal cord
Organ
4
epithelium
Date released
3
February, 2024
2
February, 2021
Software used
2
deltasvm
2
macs
1
qTLtools
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_term_name!
Calu-1 cell
Showing 5 of 5 results
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Download
FileSet
DSR107EVS
released
Annotation file set
: Histone modifications annotation for Others C666-1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP