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Citing CMDGA
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Annotation type
815
histone modifications
795
candidate regulatory elements
698
binding sites
155
gene expression
10
accessible chromatin
2
eQTL
2
target gene predictions
1
representative DNase hypersensitivity sites
1
variant allelic effects
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
DNase-seq
Available data
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
Biosample term
1
islet of Langerhans
1
myocyte
1
skeletal muscle tissue
Organ
1
adipose tissue
connective tissue
1
musculature of body
1
pancreas
Life stage
2
adult
Date released
94
January, 2022
24
February, 2020
19
August, 2021
6
February, 2024
3
February, 2021
3
May, 2021
1
March, 2023
Software used
1
altius-index
1
fastqtl
1
qTLtools
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
T-helper 17 cell
organ_slims!
connective tissue
Showing 3 of 3 results
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FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259PWV
released
Annotation file set
: Genetic regulators (quantitative trait loci; QTLs) of expression (eQTLs) of human skeletal muscle from FUSION study
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023QMR
released
Annotation file set
: Pancreatic islet eQTL summary statistics from the INSPIRE consortium
Lab:
AMP-T2D consortium
Project:
AMP