Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
19
accessible chromatin
15
gene expression
6
candidate regulatory elements
4
eQTL
4
target gene predictions
2
chromatin state
2
hQTL
1
binding sites
1
meQTL
1
sQTL
Annotation Category
4
Genetic variant effects
4
Target gene links
Annotation type Category
4
RNA-seq
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
8
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
tissue
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
18
brain
17
adrenal gland
17
lung
17
small intestine
16
liver
16
muscle of arm
16
placenta
15
kidney
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
islet of Langerhans
13
left lung
13
muscle of back
12
thymus
11
adipose tissue
11
right lung
10
hematopoietic multipotent progenitor cell
10
macrophage
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
GM12878
8
H9
8
endothelial cell
8
smooth muscle cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
heart left ventricle
7
lymphocyte
7
psoas muscle
7
trophoblast cell
6
MCF-7
6
T cell
6
adipocyte
6
body of pancreas
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
regulatory T cell
6
sigmoid colon
6
subcutaneous adipose tissue
6
thyroid gland
6
transverse colon
5
caudate nucleus
5
coronary artery
5
gastrocnemius medialis
5
keratinocyte
5
muscle of trunk
5
pancreas
5
skeletal muscle tissue
5
substantia nigra
5
tibial nerve
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
astrocyte
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
heart right ventricle
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
neural progenitor cell
4
neutrophil
4
omental fat pad
4
pancreatic delta cell
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
aorta
3
ascending aorta
3
blood cell
3
breast epithelium
3
chorion membrane
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
prostate gland
3
skeletal muscle myoblast
3
skin fibroblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cartilage tissue
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
memory B cell
Organ
2
epithelium
2
esophagus
Life stage
3
adult
Date released
3
January, 2022
2
May, 2021
2
September, 2022
1
January, 2021
Software used
3
qTLtools
2
r
1
abc
1
cicero
1
limix
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
7
AMP
1
T1D
RFA
7
AMP
1
T1D
annotation_type_category!
pCHi-C
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR472KLK
released
Annotation file set
: Target gene predictions for BSS00326 esophagus squamous epithelium from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006YBU
released
Annotation file set
: Target gene predictions for BSS00325 esophagus squamous epithelium from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D