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Schema
Citing CMDGA
Clear Filters
Annotation type
30
candidate regulatory elements
4
accessible chromatin
3
target gene predictions
2
histone modifications
1
binding sites
1
eQTL
1
gene expression
Annotation Category
3
Target gene links
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
pCHi-C
1
RNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
13
islet of Langerhans
10
macrophage
10
pituitary stalk
9
liver
9
pericyte cell
8
endothelial cell
7
GM12878
7
H9
7
smooth muscle cell
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
lymphocyte
6
monocyte
6
olfactory receptor cell
6
subcutaneous adipose tissue
5
adipose tissue
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
adipocyte
3
adrenal gland
3
astrocyte
3
blood cell
3
colon epithelial cell
3
coronary artery
3
keratinocyte
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
natural killer cell
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
psoas muscle
3
putamen
3
regulatory T cell
3
skin of body
3
stomach
3
substantia nigra
3
type B pancreatic cell
2
BJAB cell
2
CD4-positive helper T cell
2
HCT116
2
Jurkat
2
MCF 10A cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
body of pancreas
2
brain
2
cardiomyocytes (cardiac muscle cell)
2
cartilage tissue
2
caudate nucleus
2
cerebellum
2
cortical cell of adrenal gland
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
fat cell
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
heart left ventricle
2
hepatocyte
2
hypothalamus
2
luminal epithelial cell of mammary gland
2
memory B cell
2
mesenchymal stem cell
2
microglial cell
2
muscle
2
naive B cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neutrophil
2
nucleus accumbens
2
omental fat pad
2
ovary
2
placenta
2
right atrium auricular region
2
skeletal muscle tissue
2
small intestine
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
thyroid gland
2
tibial artery
2
tibial nerve
2
transverse colon
2
trophoblast cell
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
uterus
1
A549
1
A673
1
Ammon's horn
1
B cell
1
B cell, CD19-positive
1
C1 segment of cervical spinal cord
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
Leydig cell
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
adult endothelial progenitor cell
1
alveolar macrophage
1
aorta
1
ascending aorta
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
breast
1
breast epithelium
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cell
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
ciliated cell
1
club cell
1
colon goblet cell
1
colon sigmoid
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
erythroblast
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
Organ
3
stomach
1
thymus
Date released
September, 2022
3
May, 2021
1
January, 2022
Software used
3
abc
1
qTLtools
Lab
3
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
pCHi-C
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118ZZL
released
Annotation file set
: enhancer-gene predicton of thymus_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP