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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
88
histone modifications
18
accessible chromatin
15
gene expression
4
candidate regulatory elements
4
eQTL
4
target gene predictions
3
binding sites
2
chromatin state
2
hQTL
1
meQTL
1
sQTL
Annotation Category
4
Genetic variant effects
4
Target gene links
Annotation type Category
4
RNA-seq
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
snATAC-seq
Available data
4
bed bed3+
File set status
8
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
brain
18
lung
18
small intestine
17
liver
16
muscle of arm
16
placenta
15
kidney
14
common myeloid progenitor, CD34-positive
14
islet of Langerhans
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
adipose tissue
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
macrophage
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
9
spleen
8
GM12878
8
H9
8
heart left ventricle
8
psoas muscle
8
smooth muscle cell
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell
7
lymphocyte
7
ovary
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T cell
6
adipocyte
6
body of pancreas
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
subcutaneous adipose tissue
6
thyroid gland
6
transverse colon
5
caudate nucleus
5
coronary artery
5
gastrocnemius medialis
5
heart right ventricle
5
keratinocyte
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
neutrophil
5
regulatory T cell
5
skeletal muscle tissue
5
substantia nigra
5
tibial nerve
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
astrocyte
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
omental fat pad
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
prostate gland
3
skeletal muscle myoblast
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cartilage tissue
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
microglial cell
Organ
2
bronchus
2
epithelium
Life stage
2
unknown
1
adult
Date released
3
January, 2022
2
May, 2021
2
September, 2022
1
May, 2020
Software used
3
qTLtools
2
r
1
abc
1
chicago
1
limix
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
snATAC-seq
biosample_term_name!
vagina
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR458CQB
released
Annotation file set
: Target gene predictions for BSS00153 bronchial epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR960FTY
released
Annotation file set
: Target gene predictions for BSS00150 bronchial epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP