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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
10
gene expression
7
target gene predictions
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
7
Target gene links
1
Genetic variant effects
Annotation type Category
6
ATAC-seq
1
RNA-seq
1
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
brain
18
lung
18
small intestine
17
liver
16
muscle of arm
16
placenta
15
kidney
14
common myeloid progenitor, CD34-positive
14
islet of Langerhans
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
12
adipose tissue
11
right lung
10
hematopoietic multipotent progenitor cell
10
macrophage
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
9
spleen
8
GM12878
8
H9
8
endothelial cell
8
heart left ventricle
8
psoas muscle
8
smooth muscle cell
7
CD8-positive, alpha-beta memory T cell
7
lymphocyte
7
ovary
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T cell
6
adipocyte
6
body of pancreas
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreas
6
regulatory T cell
6
subcutaneous adipose tissue
6
thyroid gland
6
transverse colon
5
caudate nucleus
5
coronary artery
5
gastrocnemius medialis
5
heart right ventricle
5
keratinocyte
5
mesenchymal stem cell
5
muscle of trunk
5
neural progenitor cell
5
skeletal muscle tissue
5
substantia nigra
5
tibial nerve
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
astrocyte
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
neutrophil
omental fat pad
4
pancreatic delta cell
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
Ammon's horn
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
prostate gland
3
skeletal muscle myoblast
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cartilage tissue
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
Organ
8
epithelium
Date released
6
November, 2021
1
February, 2024
1
January, 2021
Software used
6
abc
1
cicero
1
qTLtools
Lab
6
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
6
ENCODE
1
AMP
1
T1D
RFA
6
ENCODE3
1
AMP2
1
T1D
biosample_term_name!
omental fat pad
month_released!
May, 2020
organ_slims!
trachea
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR885FFE
released
Annotation file set
: Target gene predictions of Endothelial Cell (General) 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR255QVL
released
Annotation file set
: Target gene predictions of Endothelial Cell (General) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR460FXP
released
Annotation file set
: Target gene predictions of Endothelial Cell (General) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR913WND
released
Annotation file set
: Target gene predictions of Endothelial (Exocrine Tissues) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR111VBL
released
Annotation file set
: Target gene predictions of Blood Brain Barrier Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR915OZA
released
Annotation file set
: Target gene predictions of Alveolar Capillary Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D