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Schema
Citing CMDGA
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Annotation type
5
accessible chromatin
3
gene expression
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
Annotation Category
3
Gene expression levels
Annotation type Category
2
RNA-seq
1
snRNA-seq
Available data
1
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
skeletal muscle fiber
2
skeletal muscle satellite cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
gastrocnemius medialis(Muscle - Skeletal)
1
left ventricle myocardium
1
skeletal muscle tissue
1
small intestine - terminal Ileum
1
type I muscle cell
1
type II muscle cell
Organ
3
musculature of body
1
esophagus
0
lymphoid tissue
Life stage
2
adult
Date released
1
February, 2020
1
February, 2024
1
March, 2024
Software used
3
r
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_type!
hQTL
Showing 3 of 3 results
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Download
FileSet
DSR852SKA
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Esophagus - Muscularis.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147UBG
released
Annotation file set
: Gene expression levels of Skeletal muscle satellite cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP