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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
binding sites
2
candidate regulatory elements
2
histone modifications
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
4
cell line
in vitro differentiated cells
1
primary cell
Biosample term
104
monocyte
55
HeLa-S3
48
H1-hESC
38
CD8-positive, alpha-beta T cell
24
K562
24
heart
23
kidney
22
stomach
20
A549
20
brain
20
hepatocyte
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
17
endothelial cell
17
epithelial cell of proximal tubule
16
muscle of arm
16
placenta
16
small intestine
15
glomerular endothelial cell
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
islet of Langerhans
13
liver
13
muscle of back
12
B cell
12
left lung
11
adipose tissue
11
breast cancer cell
10
EndoC_BH1
10
T-helper 1 cell
10
T-helper 17 cell
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
gastric cancer cell
9
heart left ventricle
9
left kidney
9
renal pelvis
9
right kidney
9
right lung
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
keratinocyte
8
lymphocyte
8
pituitary stalk
8
spinal cord
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
kidney loop of Henle thin ascending limb epithelial cell
7
macrophage
7
natural killer cell
7
neuroblastoma cell
7
ovary
7
pancreatic acinar cell
7
pancreatic ductal cell
7
pericyte cell
7
renal cortex interstitium
7
spleen
6
T-helper 2 cell
6
astrocyte
6
diffuse intrinsic pontine glioma
6
fibroblast of cardiac tissue
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
psoas muscle
5
Chondroid Chordoma
5
CyT49
5
T cell
5
aorta
5
caudate nucleus
5
cerebellum
5
esophageal adenocarcinoma
5
fibroblast
5
foreskin fibroblast
5
gastrocnemius medialis
5
hESC cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liposarcoma
5
memory B cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
olfactory receptor cell
5
pancreas
5
pancreatic beta cell
5
pancreatic delta cell
5
sigmoid colon
4
HUES8
4
Jurkat
4
adult endothelial progenitor cell
4
bone tissue
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary epithelial cell
4
melanoma cell
4
mesangial cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
skeletal muscle tissue
4
smooth muscle cell
4
squamous cell lung carcinoma
4
testis
3
22Rv1
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
Glomerular Capillary Endothelial Cell
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
KARPAS-422 cell
3
LoVo cell
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MM.1S
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
NAMALWA cell
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
OCI-LY7
3
PC-9
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
Organ
3
lung
Life stage
1
embryonic
Date released
2
February, 2021
2
May, 2021
1
September, 2022
Software used
2
macs
2
r
1
abc
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_type!
in vitro differentiated cells
Showing 5 of 5 results
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Download
FileSet
DSR772ORX
released
Annotation file set
: Target gene predictions for BSS00720 IMR-90 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR927IPU
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Expanded_potential_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR843YYZ
released
Annotation file set
: Histone modifications annotation for Lung IMR-90 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895REE
released
Annotation file set
: enhancer-gene predicton of IMR90-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP