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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
1
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
101
monocyte
33
CD8-positive, alpha-beta T cell
23
neural progenitor cell
19
hepatocyte
17
epithelial cell of proximal tubule
15
glomerular endothelial cell
13
endothelial cell
13
islet of Langerhans
11
breast cancer cell
11
cardiomyocytes
10
EndoC_BH1
10
kidney
10
progenitor cell of endocrine pancreas
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
induced pluripotent stem cell
9
pancreatic ductal cell
8
Rhabdomyosarcoma
8
fibroblast
8
neuroblastoma cell
8
regulatory T cell
7
T-helper 1 cell
7
T-helper 17 cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
kidney loop of Henle thin ascending limb epithelial cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
glomerular visceral epithelial cell
6
hESC cell
6
heart
6
kidney interstitial cell
6
liposarcoma
6
macrophage
6
neuroblastoma cell line
6
squamous cell lung carcinoma
6
subcutaneous adipose tissue
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
brain
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
melanoma cell
5
mesangial cell
5
osteosarcoma
5
pancreatic acinar cell
4
B cell
4
adipocyte
4
adipose tissue
4
bone tissue
4
cardiac muscle cell
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
heart left ventricle
4
hepatic stellate cell
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
natural killer cell
4
nephron progenitor
4
osteoblast
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
rhabdomyosarcoma cell
4
right atrium auricular region
4
skeletal muscle fiber
4
smooth muscle cell
4
tibial nerve
4
vascular associated smooth muscle cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
Schwann cell
3
T Cell
3
T cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adult endothelial progenitor cell
3
body of pancreas
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
coronary artery
3
diffuse large B-cell lymphoma
3
effector memory CD8-positive, alpha-beta T cell
3
embryonic stem cell
3
enterocyte
3
esophageal squamous cell carcinoma
3
frontal cortex
3
glioblastoma cell
3
glioma cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
mast cell
3
memory B cell
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuronal stem cell
3
occipital lobe
3
pancreatic ductal adenocarcinoma
3
pancreatic polypeptide-secreting cell
3
putamen
3
retina
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
tibial artery
2
cardiac fibroblast
2
muscle of leg
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
Kupffer cell
2
MCF-7
2
MIN6
2
Mantle cell lymphoma
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Rh-4 cell
2
T follicular helper cell
2
Th1 cell
2
acute myeloid leukemia cell
2
amygdala
2
ascending aorta
2
astrocyte
2
basal cell
2
bronchial epithelial cell
2
cerebellum (Hemisphere)
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
effector CD4-positive, alpha-beta T cell
Organ
5
brain
Life stage
1
fetal
Date released
3
February, 2021
1
February, 2020
1
May, 2020
Software used
3
macs
1
deltasvm
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
Fine-mapped variants
pQTL
Showing 5 of 5 results
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Download
FileSet
DSR980HRA
released
Annotation file set
: Histone modifications annotation for Neural Whole_brains from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392JNG
released
Annotation file set
: Histone modifications annotation for Neural Fetal_brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR027TQK
released
Annotation file set
: Histone modifications annotation for Neural Adult_brains from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP