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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
19
candidate regulatory elements
10
chromatin state
10
target gene predictions
3
accessible chromatin
3
gene expression
1
binding sites
1
histone modifications
Annotation Category
3
Gene expression levels
1
cis-regulatory elements
Annotation type Category
snDropSeq
2
RNA-seq
1
ChIP-seq
1
scRNA-seq
Available data
2
tsv
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
101
monocyte
CD8-positive, alpha-beta T cell
23
neural progenitor cell
17
hepatocyte
12
islet of Langerhans
11
breast cancer cell
11
cardiomyocytes
11
endothelial cell
10
progenitor cell of endocrine pancreas
9
EndoC_BH1
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
induced pluripotent stem cell
9
kidney
8
Rhabdomyosarcoma
8
neuroblastoma cell
8
pancreatic ductal cell
8
regulatory T cell
7
T-helper 1 cell
7
T-helper 17 cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
melanoma cell
5
osteosarcoma
5
subcutaneous adipose tissue
4
B cell
4
brain
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
heart
4
natural killer cell
4
nephron progenitor
4
osteoblast
4
pancreatic acinar cell
4
rhabdomyosarcoma cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adipocyte
3
bone tissue
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
diffuse large B-cell lymphoma
3
effector memory CD8-positive, alpha-beta T cell
3
embryonic stem cell
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
hepatocyte(AFP)
3
keratinocyte
3
kidney interstitial cell
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
macrophage
3
mammary epithelial cell
3
memory B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuronal stem cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal adenocarcinoma
3
smooth muscle cell of the coronary artery
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
Kupffer cell
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
T follicular helper cell
2
Th1 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
amygdala
2
astrocyte
2
body of pancreas
2
bronchial epithelial cell
2
cardiac muscle cell
2
caudate nucleus
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endometriosis
2
epithelial cell of proximal tubule
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
frontal cortex
2
glial cell
2
glioblastoma multiforme cancer stem cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart left ventricle
2
hematopoietic cell
2
hematopoietic multipotent progenitor cell
2
hypothalamus
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mast cell
2
mature natural killer cell
2
medulloblastoma cell line
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
meso-epithelial cell
2
metastatic melanoma
2
multiple myeloma cell line
2
naive B cel
2
nucleus accumbens
2
occipital lobe
2
omental fat pad
2
pancreatic cell line
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
placenta
2
plasma cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
Organ
2
connective tissue
Life stage
2
fetal
Date released
2
February, 2021
1
February, 2020
1
May, 2021
Software used
3
r
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
snDropSeq
biosample_term_name!
CD8-positive, alpha-beta T cell
Showing 4 of 4 results
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Download
FileSet
DSR782OVI
released
Annotation file set
: Gene expression annotation of multipotent stem cell_multipotent cardiac progenitor (MCP) PDGFRA+ISL1+ on day 3 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR383WGV
released
Annotation file set
: Histone modifications annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392DWJ
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of Mes from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR095ALJ
released
Annotation file set
: Gene expression levels of Kidney mesangial cell from RNA-seq (ENCODE) fetal
Lab:
AMP-T2D consortium
Project:
AMP