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Schema
Citing CMDGA
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Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snRNA-seq
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
23
neural progenitor cell
20
CD8-positive, alpha-beta T cell
11
breast cancer cell
11
cardiomyocytes
10
progenitor cell of endocrine pancreas
9
EndoC_BH1
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
induced pluripotent stem cell
9
kidney
8
Rhabdomyosarcoma
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
islet of Langerhans
7
pancreatic ductal cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
melanoma cell
5
osteosarcoma
4
B cell
4
brain
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
endothelial cell
4
hepatocyte
4
monocyte
4
nephron progenitor
4
rhabdomyosarcoma cell
3
Ewing sarcoma
3
S-shaped body
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
central memory CD8-positive, alpha-beta T cell
3
diffuse large B-cell lymphoma
3
effector memory CD8-positive, alpha-beta T cell
3
embryonic stem cell
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart
3
hepatocyte(AFP)
3
keratinocyte
3
kidney interstitial cell
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
memory B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuronal stem cell
3
osteoblast
3
pancreatic acinar cell
3
pancreatic ductal adenocarcinoma
3
regulatory T cell
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
T follicular helper cell
2
Th1 cell
2
acute myeloid leukemia cell
2
adipocyte
2
astrocyte
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
gamma-delta T cell
2
glial cell
2
glioblastoma multiforme cancer stem cell
2
hematopoietic cell
2
hematopoietic multipotent progenitor cell
2
hepatic stellate cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mature natural killer cell
2
medulloblastoma cell line
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
meso-epithelial cell
2
metastatic melanoma
2
multiple myeloma cell line
2
naive B cel
2
natural killer cell
2
occipital lobe
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic cell line
2
pancreatic delta cell
2
pancreatic stellate cell
2
placenta
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
renal vesicle
2
skeletal muscle fiber
2
skeletal muscle tissue
2
smooth muscle cell
2
synovial sarcoma cell
2
temporal lobe
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
ARH-77 cell
1
AU565 cell
1
Adipose stromal cell
1
AsPC-1 cell
1
B-1a B cell
1
B-cell lymphoma cell
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BG03
1
BGC-823 cell
1
BHY cell
1
BICR 31
1
BJ cell
1
BT-474 cell
1
BT-549 cell
1
Barrett's epithelial cell line
1
Barrett's esophagus
1
Brodmann (1909) area 9
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-33 cell
1
CAL-51 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHP-134 cell
1
CHP-212 cell
1
CMK
1
COLO 679 cell
1
COLO 741 cell
1
COLO-320 cell
1
COR-L311 cell
1
CTV-1 cell
1
CaSki cell
1
Caco-2 cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
Organ
2
connective tissue
Life stage
adult
Date released
1
February, 2021
1
February, 2024
Software used
1
deeptools
1
macs
1
r
1
samtools
1
umitools
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
organ_slims!
bone element
relevant_life_stage!
adult
Showing 2 of 2 results
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Download
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP