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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
eQTL
2
gene expression
1
variant allelic effects
Annotation Category
3
Target gene links
2
Gene expression levels
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
RNA-seq
1
Capture-C
Available data
3
bed bed3+
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
22
heart
22
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
18
monocyte
17
brain
17
small intestine
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
hepatocyte
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
endothelial cell
13
left lung
13
muscle of back
12
B cell
12
neural progenitor cell
11
hematopoietic multipotent progenitor cell
11
liver
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
left kidney
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
9
spleen
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
adipose tissue
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
body of pancreas
7
dendritic cell
7
lymphocyte
7
ovary
7
pancreatic delta cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T-helper 2 cell
6
heart right ventricle
6
islet of Langerhans
6
macrophage
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic acinar cell
5
aorta
5
astrocyte
5
cardiomyocytes (cardiac muscle cell)
5
gastrocnemius medialis
5
keratinocyte
5
memory B cell
5
mesenchymal stem cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreas
5
pancreatic alpha cell
5
pancreatic beta cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
iPSC derived cell line
4
mammary gland epithelial cell
4
omental fat pad
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HCT116
3
HepG2
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
SK-N-SH
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
epithelial cell of proximal tubule
3
esophagus
3
foreskin fibroblast
3
glomerular endothelial cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
osteoblast
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
right cardiac atrium
Organ
5
brain
Life stage
3
adult
1
fetal
Date released
2
September, 2022
1
February, 2020
1
January, 2020
1
September, 2023
Software used
4
r
1
chicago
Lab
4
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
5
AMP
RFA
4
AMP
1
AMP2
annotation_type!
eQTL
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR540WDY
released
Annotation file set
: Target gene predictions for BSS00371 frontal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR897QIE
released
Annotation file set
: Target gene predictions for BSS00369 frontal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR295GMV
released
Annotation file set
: Gene expression levels of fetal brain frontal cortex from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802YAO
released
Annotation file set
: Gene expression summary of TPM of brain cortex from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP