Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
4
target gene predictions
2
gene expression
1
variant allelic effects
Annotation Category
4
Target gene links
2
Gene expression levels
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
primary cell
Biosample term
52
HeLa-S3
46
H1-hESC
19
HFFc6
18
monocyte
17
K562
17
endothelial cell
16
epithelial cell of proximal tubule
15
CD14-positive monocyte
15
hepatocyte
14
glomerular endothelial cell
islet of Langerhans
11
cardiomyocytes
10
induced pluripotent stem cell
10
pituitary stalk
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
pancreatic ductal cell
9
pericyte cell
9
progenitor cell of endocrine pancreas
8
CD8-positive, alpha-beta T cell
8
neural progenitor cell
8
regulatory T cell
8
smooth muscle cell
7
GM12878
7
H9
7
T-helper 1 cell
7
T-helper 17 cell
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic delta cell
6
adipocyte
6
kidney interstitial cell
6
lymphocyte
6
macrophage
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
5
adipose tissue
5
cardiac precursors (cardiac muscle cell)
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
subcutaneous adipose tissue
4
B cell
4
CyT49
4
HUES8
4
adrenal gland
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
gamma-delta T cell
4
heart
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
liver
4
natural killer cell
4
nephron progenitor
4
psoas muscle
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
aorta
3
body of pancreas
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
effector memory CD8-positive, alpha-beta T cell
3
heart left ventricle
3
heart right ventricle
3
hepatocyte(AFP)
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
osteoblast
3
ovary
3
pancreas
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
skeletal muscle satellite cell
3
smooth muscle cell of the coronary artery
3
spleen
3
stomach
3
thymus
3
type B pancreatic cell
2
Ammon's horn
2
BJAB cell
2
CD4-positive helper T cell
2
HCT116
2
HepG2
2
Jurkat
2
Kupffer cell
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
alternatively activated macrophage
2
blood vessel smooth muscle cell
2
cerebellum
2
coronary artery
2
cortical cell of adrenal gland
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
inflammatory macrophage
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung
2
lymphocyte of B lineage (iPSC)
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesendoderm
2
naive B cel
2
omental fat pad
2
plasma cell
Organ
6
connective tissue
Life stage
1
adult
Date released
4
May, 2021
1
February, 2021
1
February, 2024
Software used
4
abc
2
r
1
deeptools
1
samtools
1
umitools
Lab
4
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
annotation_type_category!
ChIP-seq
biosample_term_name!
excitatory neuron
islet of Langerhans
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP