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Schema
Citing CMDGA
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Annotation type
8
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
0
gene expression
Annotation Category
1
Target gene links
Annotation type Category
RNA-seq
1
HiC
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
lung
17
small intestine
16
brain
16
epithelial cell of proximal tubule
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
glomerular endothelial cell
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
liver
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
dendritic cell
7
endothelial cell
7
heart left ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
pancreatic ductal cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
heart right ventricle
6
hepatocyte
6
kidney interstitial cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
5
aorta
5
body of pancreas
5
cardiomyocytes (cardiac muscle cell)
5
gastrocnemius medialis
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T cell
4
T-helper 17 cell
4
adult endothelial progenitor cell
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
macrophage
4
mesangial cell
4
pancreatic acinar cell
4
pancreatic beta cell
4
pancreatic delta cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 2 cell
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
layer of hippocampus
3
mammary gland epithelial cell
3
mesendoderm
3
naive T cell
3
nephron progenitor
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
S-shaped body
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
alternatively activated macrophage
2
angular gyrus
2
ascending aorta
2
astrocyte
2
bipolar neuron
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gamma-delta T cell
2
hepatic stellate cell
2
iPS DF 19.11
2
inflammatory macrophage
2
kidney inner medulla collecting duct intercalated cell
2
kidney loop of Henle descending limb epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
monocyte
2
mucosa of rectum
Organ
1
epithelium
1
pancreas
Date released
1
March, 2020
Software used
1
hiccups
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type_category!
RNA-seq
Showing 1 of 1 results
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Download
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP