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Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
5
target gene predictions
1
chromatin state
1
gene expression
Annotation Category
5
Target gene links
1
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
RNA-seq
1
pCHi-C
1
scRNA-seq
1
snATAC-seq
Available data
5
bed bed3+
1
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
21
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
lung
17
small intestine
16
brain
16
epithelial cell of proximal tubule
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
endothelial cell
14
glomerular endothelial cell
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
left kidney
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
H9
8
psoas muscle
8
smooth muscle cell
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
dendritic cell
7
heart left ventricle
7
hepatocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
pancreatic delta cell
7
sigmoid colon
7
trophoblast cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
heart right ventricle
6
kidney interstitial cell
6
macrophage
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreatic acinar cell
6
pancreatic beta cell
5
aorta
5
body of pancreas
5
cardiomyocytes (cardiac muscle cell)
5
gastrocnemius medialis
5
glomerular visceral epithelial cell
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
neural progenitor cell
5
pancreas
5
pancreatic alpha cell
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
T-helper 17 cell
4
adult endothelial progenitor cell
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary gland epithelial cell
4
mesangial cell
4
regulatory T cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HCT116
3
HepG2
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
SK-N-SH
3
T Cell
3
T-helper 1 cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
naive T cell
3
nephron progenitor
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
Life stage
1
adult
Date released
2
May, 2021
1
August, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
1
chicago
1
cicero
1
r
1
seurat
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
AMP2
1
ENCODE3
1
T1D
annotation_type_category!
RNA-seq
organ_slims!
blood
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP