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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
11
candidate regulatory elements
7
target gene predictions
6
chromatin state
4
accessible chromatin
2
binding sites
2
histone modifications
1
caQTL
1
eQTL
1
gene expression
Annotation Category
7
Target gene links
1
Gene expression levels
Annotation type Category
6
DNase-seq
5
ChIP-seq
single cell RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snRNA-seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
tissue
1
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
18
monocyte
17
brain
17
endothelial cell
17
epithelial cell of proximal tubule
17
hepatocyte
17
small intestine
16
muscle of arm
15
glomerular endothelial cell
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
islet of Langerhans
12
neural progenitor cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
liver
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
induced pluripotent stem cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
9
spleen
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
adipocyte
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
ovary
7
pancreatic delta cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
macrophage
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic ductal cell
5
aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary gland epithelial cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
S-shaped body
3
SK-N-SH
3
ascending aorta
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
right cardiac atrium
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T follicular helper cell
Organ
5
connective tissue
3
lung
Life stage
4
adult
1
embryonic
Date released
5
September, 2022
1
February, 2024
1
March, 2020
1
May, 2021
Software used
6
r
1
abc
1
deeptools
1
nospecificsoft_customcode
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_type_category!
single cell RNA-seq
Showing 8 of 8 results
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Download
FileSet
DSR334STP
released
Annotation file set
: Target gene predictions for BSS01871 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR505TRN
released
Annotation file set
: Target gene predictions for BSS01870 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR244BFG
released
Annotation file set
: Target gene predictions for BSS01869 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP