Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
2
binding sites
2
histone modifications
1
variant allelic effects
Annotation Category
3
Gene expression levels
3
Target gene links
Annotation type Category
3
scRNA-seq
single cell RNA-seq
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
3
bed bed3+
2
tsv
File set status
6
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
22
stomach
12
islet of Langerhans
9
EndoC_BH1
7
body of pancreas
7
pancreatic delta cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic ductal cell
5
pancreas
4
endocrine pancreas
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
type B pancreatic cell
2
Panc1
2
stomach smooth muscle
1
8988T
1
HPDE6-E6E7
1
activated pancreatic stellate cell
1
esophagus - gastroesophageal junction
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
gastroesophageal sphincter
1
mucosa of stomach
1
pancreatic alpha+beta cell
1
pancreatic cycling alpha cell
1
pancreatic gamma+epsilon cell
1
parietal cell
1
peptic cell
1
quiescent pancreatic stellate cell
1
stomach neuroendocrine cell
Organ
6
epithelium
6
pancreas
0
stomach
Life stage
1
adult
Date released
2
May, 2021
1
August, 2018
1
January, 2021
1
March, 2023
1
November, 2021
Software used
3
r
2
abc
1
cicero
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
annotation_type_category!
single cell RNA-seq
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR341RJP
released
Annotation file set
: Gene expression annotation of pancreatic ductal from single-cell transcriptome analysis
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR263AKI
released
Annotation file set
: Target gene predictions of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR178TSY
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of pancreatic ductal cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR051SJQ
released
Annotation file set
: enhancer-gene predicton of pancreatic-ductal-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR946TIV
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
TSTSR354ZRH
released
Annotation file set
: pancreatic ductal cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP