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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
4
binding sites
3
histone modifications
3
target gene predictions
2
candidate regulatory elements
1
gene expression
Annotation Category
3
Target gene links
1
Gene expression levels
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
1
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
17
brain
17
monocyte
17
small intestine
16
epithelial cell of proximal tubule
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
glomerular endothelial cell
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
islet of Langerhans
12
neural progenitor cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
liver
11
right lung
10
T-helper 1 cell
10
induced pluripotent stem cell
10
pituitary stalk
10
regulatory T cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
GM12878
8
H9
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
ovary
7
pancreatic ductal cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T-helper 2 cell
6
dendritic cell
6
endothelial cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
aorta
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
muscle of trunk
5
natural killer cell
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of dermis
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
testis
3
Ammon's horn
3
HCT116
3
HepG2
3
Peyer's patch
3
S-shaped body
3
SK-N-SH
3
ascending aorta
3
astrocyte
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
macrophage
3
mammary gland epithelial cell
3
memory B cell
3
mesendoderm
3
naive T cell
3
neurosphere
3
neutrophil
3
right cardiac atrium
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T follicular helper cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
bipolar neuron
2
bronchial epithelial cell
2
cardiac muscle cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
Disease term
1
large-cell immunoblastic lymphoma
Organ
2
blood
2
bodily fluid
Life stage
1
adult
Date released
2
May, 2021
1
March, 2020
1
September, 2022
Software used
2
r
1
abc
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_term_name!
fibroblast of lung
Showing 4 of 4 results
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Download
FileSet
DSR396NKF
released
Annotation file set
: Target gene predictions for BSS01391 OCI-LY7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR666YAE
released
Annotation file set
: enhancer-gene predicton of OCI-LY7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP