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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
18
histone modifications
5
accessible chromatin
5
target gene predictions
2
gene expression
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
Target gene links
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
52
HeLa-S3
47
H1-hESC
21
heart
19
HFFc6
19
kidney
17
K562
brain
16
CD14-positive monocyte
16
lung
16
muscle of arm
16
stomach
15
placenta
15
small intestine
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
neural progenitor cell
11
adrenal gland
11
cardiomyocytes
11
right lung
10
endothelial cell
10
induced pluripotent stem cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
8
H9
8
pancreatic ductal cell
8
spinal cord
7
CD8-positive, alpha-beta T cell
7
GM12878
7
lymphocyte
7
trophoblast cell
6
B cell
6
CD4-positive, alpha-beta memory T cell
6
T-helper 17 cell
6
adipocyte
6
dendritic cell
6
islet of Langerhans
6
olfactory receptor cell
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
keratinocyte
5
liver
5
memory B cell
5
monocyte
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic acinar cell
5
pancreatic delta cell
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 2 cell
4
chorionic villus
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
endothelial cell of umbilical vein
4
fibroblast
4
foreskin keratinocyte
4
heart left ventricle
4
heart right ventricle
4
hepatocyte
4
iPSC derived cell line
4
macrophage
4
mesenchymal stem cell
4
nephron progenitor
4
pancreatic alpha cell
4
pancreatic beta cell
4
psoas muscle
4
regulatory T cell
4
spleen
3
CD4-positive, alpha-beta T cell
3
HepG2
3
S-shaped body
3
SK-N-SH
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
hepatocyte(AFP)
3
kidney interstitial cell
3
mesendoderm
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
osteoblast
3
ovary
3
pancreatic A cell
3
pancreatic stellate cell
3
retina
3
sigmoid colon
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
2
22Rv1
2
A673
2
BJAB cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
NAMALWA cell
2
PC-9
2
Panc1
2
SK-N-DZ
2
T follicular helper cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
aorta
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cortical cell of adrenal gland
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
eye
2
gabaergic neuron
2
gamma-delta T cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
hematopoietic multipotent progenitor cell
2
iPS DF 19.11
2
kidney epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
limb
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
naive B cel
2
natural killer cell
2
neural cell
2
pancreas
2
pancreatic polypeptide-secreting cell
2
renal vesicle
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
tongue
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
1
A549
1
AG04449 cell
1
AG04450 cell
1
Ammon's horn
1
B cell, CD19-positive
1
B-1a B cell
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
Life stage
adult
Date released
4
May, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
2
r
1
chicago
1
cicero
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
5
AMP
1
ENCODE
1
T1D
RFA
5
AMP
1
ENCODE3
1
T1D
biosample_term_name!
brain
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP