Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
2
gene expression
1
chromatin state
Annotation Category
4
Target gene links
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
snATAC-seq
Available data
4
bed bed3+
3
tsv
txt
File set status
6
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
17
brain
17
hepatocyte
17
monocyte
17
small intestine
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
endothelial cell
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
12
islet of Langerhans
12
neural progenitor cell
11
B cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
liver
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
induced pluripotent stem cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
left kidney
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
9
spleen
8
GM12878
8
H9
8
adipocyte
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
lymphocyte
7
ovary
7
pancreatic delta cell
7
trophoblast cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
T-helper 2 cell
6
dendritic cell
6
heart right ventricle
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
5
aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
keratinocyte
5
memory B cell
5
mesenchymal stem cell
5
muscle of trunk
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
4
CyT49
4
HUES8
4
T cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
macrophage
4
mammary gland epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HepG2
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
SK-N-SH
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
ascending aorta
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
glomerular visceral epithelial cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney interstitial cell
3
kidney tubule cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
right cardiac atrium
Date released
4
May, 2021
1
January, 2021
May, 2020
1
November, 2021
Software used
3
abc
2
r
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
files.file_type!
txt
month_released!
May, 2020
organ_slims!
large intestine
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D