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Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
5
Target gene links
1
Gene expression levels
Annotation type Category
4
HiC
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
4
cell line
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
18
monocyte
17
brain
17
epithelial cell of proximal tubule
17
small intestine
16
endothelial cell
16
hepatocyte
16
muscle of arm
15
glomerular endothelial cell
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
islet of Langerhans
11
adipose tissue
11
liver
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
ovary
7
pancreatic delta cell
7
sigmoid colon
7
smooth muscle cell
6
MCF-7
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
macrophage
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic ductal cell
5
aorta
5
astrocyte
5
gastrocnemius medialis
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CyT49
4
HUES8
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary gland epithelial cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
retina
4
right atrium auricular region
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HCT116
3
HepG2
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
SK-N-SH
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
ascending aorta
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
Organ
4
embryo
2
connective tissue
Date released
5
February, 2024
1
March, 2020
Software used
1
deeptools
1
nospecificsoft_customcode
1
r
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_type!
in vitro differentiated cells
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR545HRQ
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR067ZYX
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. gut endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976RDI
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. definitive endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412OXF
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP