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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
gene expression
2
target gene predictions
Annotation Category
2
Gene expression levels
2
Target gene links
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
2
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
18
monocyte
17
brain
17
small intestine
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
islet of Langerhans
12
neural progenitor cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
liver
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
induced pluripotent stem cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
9
spleen
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
adipocyte
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
lymphocyte
7
natural killer cell
7
ovary
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T-helper 2 cell
6
heart right ventricle
6
kidney interstitial cell
6
macrophage
6
mononuclear cell
6
olfactory receptor cell
5
aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Fibroblast
3
HCT116
3
HepG2
3
M2 Macrophage
3
Mast Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
SK-N-SH
3
T Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
ascending aorta
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney resident macrophage
3
layer of hippocampus
3
mesendoderm
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic stellate cell
3
right cardiac atrium
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T follicular helper cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
alternatively activated macrophage
Organ
epithelium
4
musculature of body
Life stage
2
adult
Date released
1
February, 2020
1
February, 2024
1
November, 2021
1
September, 2022
Software used
3
r
1
abc
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
3
AMP
1
ENCODE
RFA
2
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
fallopian tube
organ_slims!
epithelium
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR326ORZ
released
Annotation file set
: Target gene predictions for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920UVL
released
Annotation file set
: Target gene predictions of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147UBG
released
Annotation file set
: Gene expression levels of Skeletal muscle satellite cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP