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Schema
Citing CMDGA
Clear Filters
Annotation type
18
candidate regulatory elements
5
accessible chromatin
3
gene expression
2
chromatin state
2
variant allelic effects
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
Gene expression levels
1
Target gene links
Annotation type Category
2
RNA-seq
1
HiC
1
scRNA-seq
Available data
3
tsv
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
17
endothelial cell
17
monocyte
16
epithelial cell of proximal tubule
15
CD14-positive monocyte
15
hepatocyte
14
glomerular endothelial cell
12
islet of Langerhans
11
cardiomyocytes
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic ductal cell
9
pericyte cell
9
progenitor cell of endocrine pancreas
8
CD8-positive, alpha-beta T cell
8
neural progenitor cell
8
regulatory T cell
8
smooth muscle cell
7
T-helper 1 cell
7
T-helper 17 cell
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
6
adipocyte
6
kidney interstitial cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
5
adipose tissue
5
cardiac precursors (cardiac muscle cell)
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
subcutaneous adipose tissue
4
B cell
4
adrenal gland
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
gamma-delta T cell
4
heart
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
liver
4
natural killer cell
4
nephron progenitor
4
psoas muscle
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
aorta
3
body of pancreas
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
effector memory CD8-positive, alpha-beta T cell
3
heart left ventricle
3
heart right ventricle
3
hepatocyte(AFP)
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
osteoblast
3
ovary
3
pancreas
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
skeletal muscle satellite cell
3
spleen
3
stomach
3
thymus
3
type B pancreatic cell
2
Ammon's horn
2
CD4-positive helper T cell
2
Kupffer cell
2
T follicular helper cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
alternatively activated macrophage
2
blood vessel smooth muscle cell
2
cerebellum
2
coronary artery
2
cortical cell of adrenal gland
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
inflammatory macrophage
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung
2
lymphocyte of B lineage (iPSC)
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesendoderm
2
naive B cel
2
omental fat pad
2
plasma cell
2
renal vesicle
2
right atrium auricular region
2
right cardiac atrium
2
sigmoid colon
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
small intestine
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
tibial nerve
2
trophoblast cell
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
uterus
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
Organ
4
heart
Life stage
2
fetal
1
adult
1
embryonic
Date released
September, 2022
1
August, 2021
1
February, 2020
1
February, 2021
1
March, 2020
Software used
3
r
1
hiccups
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
erythroid lineage cell
biosample_type!
cell line
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR321UPS
released
Annotation file set
: Gene expression annotation of heart left ventricle from single-cell transcriptome analysis map the developmental track of the human heart
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670YAY
released
Annotation file set
: Gene expression levels of Heart fetal from RNA-seq (GSE63634) + RNA-seq (ENCODE) + RNA-seq (GSE106690)
Lab:
AMP-T2D consortium
Project:
AMP