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Citing CMDGA
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Annotation type
4
accessible chromatin
3
differential activity
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
Annotation type Category
1
scRNA-seq
1
snATAC-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic stellate cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
conventional dendritic cell
1
endothelial cell
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic MUC5B+ductal cell
1
pancreatic alpha+beta cell
1
pancreatic cycling alpha cell
1
pancreatic endothelial cell
1
pancreatic gamma+epsilon cell
1
pancreatic macrophage cell
1
pancreatic mast cell
1
pancreatic polypeptide-secreting cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
Organ
2
connective tissue
2
pancreas
Date released
1
January, 2021
1
March, 2023
Software used
1
cicero
1
r
Lab
24
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
biosample_term_name!
T-helper 2 cell
Showing 2 of 2 results
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Download
FileSet
DSR457DGF
released
Annotation file set
: Gene expression annotation of pancreatic stellate from single-cell transcriptome analysis
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR457TFN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D