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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
14
accessible chromatin
7
target gene predictions
3
gene expression
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
3
Gene expression levels
2
Genetic variant effects
Annotation type Category
2
RNA-seq
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
11
cardiomyocytes
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
kidney
7
neural progenitor cell
6
fibroblast
6
islet of Langerhans
6
pancreatic ductal cell
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
endothelial cell
4
heart
4
nephron progenitor
4
skeletal muscle fiber
4
smooth muscle cell
3
S-shaped body
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
hepatocyte(AFP)
3
kidney interstitial cell
3
macrophage
3
memory B cell
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic acinar cell
2
muscle of leg
2
B cell
2
CD8-positive, alpha-beta T cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
T follicular helper cell
2
adipocyte
2
basal cell
2
brain
2
cardiac muscle cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of esophagus
2
frontal cortex
2
gamma-delta T cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
heart right ventricle
2
hepatocyte
2
kidney epithelial cell
2
left cardiac atrium
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
monocyte
2
naive B cel
2
occipital lobe
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
regulatory T cell
2
renal vesicle
2
right atrium auricular region
2
tibial artery
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain pericyte
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
central memory CD4-positive, alpha-beta T cell
1
cerebellum
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
diencephalon
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of umbilical vein
1
epithelial cell of distal tubule
1
epithelial cell of proximal tubule
1
excitatory neuron
1
glial cell
1
granulosa cell
1
heart left ventricle
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
kidney capillary endothelial cell
1
left renal cortex interstitium
1
left renal pelvis
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesenchymal cell
1
mesenchymal stem cell
1
meso-epithelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mesothelial cell
1
metanephros
1
mitral valve
1
muscle of arm
1
myeloid dendritic cell
1
naive B cell
1
naive regulatory T cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neural cell
1
osteoblast
1
pancreatic MUC5B+ductal cell
1
pancreatic alpha+beta cell
1
pancreatic cell
1
pancreatic cycling alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic gamma+epsilon cell
1
pancreatic macrophage cell
1
pancreatic mast cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
parietal lobe
1
peptic cell
1
pericardium fibroblast
1
proximal tubule
1
pulmonary valve
1
purified protein and synthetic DNA oligo binding assay
1
renal connecting tubule
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right cardiac atrium
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
skeletal muscle tissue
1
smooth muscle cell of the brain vasculature
1
stem cell
1
subcutaneous adipose tissue
1
temporal lobe
1
thoracic aorta
1
thyroid follicular cell
1
tibial nerve
1
tricuspid valve
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
1
ureteric bud
Organ
5
epithelium
Life stage
adult
1
fetal
Date released
3
February, 2024
1
February, 2021
1
May, 2021
Software used
3
r
2
deltasvm
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP