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Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
8
gene expression
7
target gene predictions
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
8
Gene expression levels
Annotation type Category
5
scRNA-seq
2
RNA-seq
1
snRNA-seq
Available data
7
tsv
3
txt
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
16
epithelial cell of proximal tubule
14
glomerular endothelial cell
13
hepatocyte
11
cardiomyocytes
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
islet of Langerhans
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
endothelial cell
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
neural progenitor cell
6
kidney interstitial cell
5
T-helper 1 cell
5
T-helper 17 cell
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
pancreatic ductal cell
5
regulatory T cell
5
subcutaneous adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
3
S-shaped body
3
adipose tissue
3
adult endothelial progenitor cell
3
cardiomyocytes (cardiac muscle cell)
3
heart
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
Kupffer cell
2
adipocyte
2
body of pancreas
2
cerebellum
2
frontal cortex
2
gamma-delta T cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
natural killer cell
2
omental fat pad
2
osteoblast
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
renal vesicle
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
tibial nerve
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
CD8-positive, alpha-beta T cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
T-helper 2 cell
1
adrenal gland
1
alpha-beta T cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte
1
bladder
1
brain
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
caudate nucleus
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
colon - sigmoid
1
colon - transverse
1
coronary artery
1
dendritic cell
1
diencephalon
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
gastrocnemius medialis(Muscle - Skeletal)
1
glial cell
1
heart left ventricle
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
hypothalamus
1
inflammatory macrophage
1
kidney - cortex
1
kidney - medulla
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left ventricle myocardium
1
liver
1
lower motor neuron
1
lung
1
macrophage
1
mature B cell
1
memory B cell
1
mesenchymal cell
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
meso-epithelial cell
1
metanephros
1
minor salivary gland
1
mitral valve
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neural cell
1
nucleus accumbens
1
occipital lobe
1
ovary
1
pancreatic MUC5B+ductal cell
1
pancreatic alpha+beta cell
1
pancreatic cell
1
pancreatic cycling alpha cell
1
pancreatic endothelial cell
1
pancreatic gamma+epsilon cell
1
pancreatic macrophage cell
1
pancreatic mast cell
1
pancreatic polypeptide-secreting cell
1
parietal lobe
1
pericardium fibroblast
1
pituitary
1
plasma cell
1
prostate
1
proximal tubule
1
pulmonary valve
1
putamen
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal cortical epithelial cell
1
renal principal cell
1
retina
1
right cardiac atrium
1
right lobe of liver
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle cell
1
spleen
1
stomach
1
substantia nigra
1
temporal lobe
1
testis
1
thyroid
1
tibial artery
1
tricuspid valve
1
type I muscle cell
1
type II muscle cell
1
ureteric bud
1
uterus
1
vagina
Organ
8
epithelium
Life stage
6
adult
1
fetal
Date released
4
February, 2021
3
August, 2021
May, 2021
1
February, 2024
Software used
8
r
3
seurat
1
deeptools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
8
AMP
KPMP
RFA
4
AMP
4
AMP2
award.project!
KPMP
biosample_term_name!
CD8-positive, alpha-beta T cell
month_released!
May, 2021
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP