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Annotation type
1710
candidate regulatory elements
1357
target gene predictions
944
chromatin state
683
gene expression
167
differential activity
160
eQTL
140
variant allelic effects
93
binding sites
74
Fine-mapped variants
74
accessible chromatin
11
caQTL
4
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
0
hQTL
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
3
adult
Date released
3
May, 2021
1
March, 2023
Software used
8
limix
macs
3
sqtlseeker
matrix-eQTL
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
macs
matrix-eQTL
Showing 4 of 4 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP