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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
histone modifications
2
variant allelic effects
1
accessible chromatin
1
binding sites
1
chromatin state
1
target gene predictions
0
meQTL
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
87
monocyte
30
CD8-positive, alpha-beta T cell
16
neural progenitor cell
11
breast cancer cell
9
gastric cancer cell
8
Rhabdomyosarcoma
8
fibroblast
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
hepatocyte
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
melanoma cell
5
osteosarcoma
4
brain
4
cardiac muscle cell
4
keratinocyte
4
macrophage
4
rhabdomyosarcoma cell
3
Ewing sarcoma
3
T cell
3
acute myeloid leukemia
3
diffuse large B-cell lymphoma
3
endothelial cell
3
enterocyte
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart
3
heart left ventricle
3
hepatic stellate cell
3
kidney
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
myofibroblast cell
3
neuronal stem cell
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
B-lymphocyte
2
COLO205
2
EndoC_BH1
2
HS-SY-2 cell
2
Jurkat
2
MCF-7
2
MIN6
2
Mantle cell lymphoma
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Rh-4 cell
2
Schwann cell
2
Th1 cell
2
acute myeloid leukemia cell
2
adipocyte
2
basal cell
2
bronchial epithelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
coronary artery
2
embryonic stem cell
2
endometriosis
2
epithelial cell of esophagus
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
goblet cell
2
hematopoietic cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
islet of Langerhans
2
leukemic stem cell
2
liver
2
mammary gland epithelial cell
2
mantle cell lymphoma cell
2
mast cell
2
medulloblastoma cell line
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
natural killer cell
2
occipital lobe
2
osteoblast
2
pancreas
2
pancreatic acinar cell
2
pancreatic cell line
2
pancreatic endocrine cell
2
placenta
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
putamen
2
retina
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
smooth muscle cell
2
superior temporal gyrus
2
synovial sarcoma cell
2
tibial artery
2
tibial nerve
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
ARH-77 cell
1
AU565 cell
1
Adipose SGBS cell line (adipocyte)
1
Adipose stromal cell
1
AsPC-1 cell
1
B-cell lymphoma cell
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BG03
1
BGC-823 cell
1
BHY cell
1
BICR 31
1
BJ cell
1
BT-474 cell
1
BT-549 cell
1
Barrett's epithelial cell line
1
Barrett's esophagus
1
Brodmann (1909) area 9
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-33 cell
1
CAL-51 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHP-134 cell
1
CHP-212 cell
1
CMK
1
COLO 679 cell
1
COLO 741 cell
1
COLO-320 cell
1
COR-L311 cell
1
CTV-1 cell
1
CaSki cell
1
Caco-2 cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
1
Capan-1 cell
1
Capan-2 cell
1
Crypt of Lieberkuhn
1
CyT49
1
D283 Med cell
1
D341 Med cell
1
DK cell
1
DLD-1 cell
Organ
2
epithelium
2
esophagus
Date released
2
February, 2021
2
February, 2024
Software used
2
deltasvm
2
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR164UJZ
released
Annotation file set
: Histone modifications annotation for Blood CD20+_B_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR671EQQ
released
Annotation file set
: Histone modifications annotation for Blood B-Lymphocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR545JGJ
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR761QWI
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP