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Citing CMDGA
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Annotation type
635
gene expression
149
differential activity
105
eQTL
14
variant allelic effects
8
accessible chromatin
4
caQTL
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
tsv
File set status
2
released
Genome assembly (visualization)
hg19
104
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
1
myocyte
1
neural progenitor cell
Date released
1
August, 2021
1
February, 2021
Software used
1
altius-index
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
assembly!
hg19
biosample_term_name!
pancreatic cell line
organ_slims!
vasculature
Showing 2 of 2 results
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FileSet
DSR680UFD
released
Annotation file set
: Histone modifications annotation of H3K27me3 ChIPseq of neural progenitor cells differentiated into neural lineage until appropriate time points (6 hours).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP