Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
3
differential activity
gene expression
3
target gene predictions
1
variant allelic effects
0
histone modifications
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
22
stomach
21
heart
20
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
liver
11
breast cancer cell
11
right lung
10
B cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
endothelial cell
8
heart left ventricle
8
keratinocyte
8
lymphocyte
8
neuroblastoma cell
8
psoas muscle
8
spleen
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
hepatocyte
7
sigmoid colon
6
diffuse intrinsic pontine glioma
6
fibroblast of cardiac tissue
6
liposarcoma
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
pancreas
6
smooth muscle cell
6
squamous cell lung carcinoma
6
trophoblast cell
5
Chondroid Chordoma
5
CyT49
5
T cell
5
astrocyte
5
body of pancreas
5
esophageal adenocarcinoma
5
fibroblast
5
foreskin fibroblast
5
gastrocnemius medialis
5
hESC cell
5
heart right ventricle
5
macrophage
5
melanoma cell
5
muscle of trunk
5
pancreatic ductal cell
5
regulatory T cell
5
thyroid gland
5
transverse colon
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mammary gland epithelial cell
4
osteoblast
4
osteosarcoma
4
pancreatic acinar cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
skeletal muscle tissue
4
skin fibroblast
4
testis
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
breast epithelium
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
skeletal muscle myoblast
3
substantia nigra
3
temporal lobe
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
HCT-116 cell
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HuH-7
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
2
January, 2021
1
February, 2021
Software used
3
cicero
Lab
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
annotation_type!
gene expression
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP