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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
6
target gene predictions
3
binding sites
2
histone modifications
1
accessible chromatin
Annotation Category
6
Target gene links
2
cis-regulatory elements
Annotation type Category
7
ChIP-seq
6
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
34
CD8-positive, alpha-beta T cell
22
stomach
21
heart
20
A549
19
CD14-positive monocyte
19
brain
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
B cell
12
liver
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
right lung
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
K562
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
heart left ventricle
8
neural progenitor cell
8
neuroblastoma cell
8
psoas muscle
8
spleen
8
trophoblast cell
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
natural killer cell
7
sigmoid colon
6
Chondroid Chordoma
6
dendritic cell
6
hESC cell
6
keratinocyte
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
ovary
6
pancreas
6
squamous cell lung carcinoma
5
T cell
5
T-cell acute lymphoblastic leukemia
5
body of pancreas
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
melanoma cell
5
mesenchymal stem cell
5
monocyte
5
muscle of trunk
5
osteosarcoma
5
regulatory T cell
thyroid gland
5
transverse colon
4
HeLa-S3
4
HepG2
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
hepatocyte
4
layer of hippocampus
4
macrophage
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
pancreatic ductal cell
4
prostate gland
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
testis
4
upper lobe of left lung
3
22Rv1
3
CD4-positive helper T cell
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
lymphoblast
3
lymphoblastoid cell line
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal adenocarcinoma
3
skin fibroblast
3
substantia nigra
3
temporal lobe
3
tibial nerve
3
trophoblast
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H9
2
HCT-116 cell
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HuH-7
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
Disease term
5
breast cancer
Organ
8
mammary gland
Life stage
5
adult
Date released
5
September, 2022
2
February, 2021
1
May, 2021
Software used
5
r
2
macs
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
biosample_term_name!
thyroid gland
organ_slims!
eye
Showing 8 of 8 results
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Download
FileSet
DSR208VEV
released
Annotation file set
: Target gene predictions for BSS01244 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR811JFD
released
Annotation file set
: Target gene predictions for BSS01243 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR701UHJ
released
Annotation file set
: Target gene predictions for BSS01240 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR432GFP
released
Annotation file set
: Target gene predictions for BSS01235 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR131CPD
released
Annotation file set
: Target gene predictions for BSS01226 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR294BDQ
released
Annotation file set
: Histone modifications annotation for Breast MCF-7-LTED from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR503YQG
released
Annotation file set
: Histone modifications annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP