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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
4
target gene predictions
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
pCHi-C
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
1
tissue
Biosample term
89
monocyte
55
HeLa-S3
39
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
20
A549
19
CD14-positive monocyte
19
HFFc6
17
neural progenitor cell
14
common myeloid progenitor, CD34-positive
12
B cell
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
adrenal gland
9
gastric cancer cell
9
stomach
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
endothelial cell
8
keratinocyte
8
lymphocyte
8
neuroblastoma cell
8
psoas muscle
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
H9
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
natural killer cell
7
sigmoid colon
7
spleen
6
Chondroid Chordoma
6
dendritic cell
6
fibroblast
6
hESC cell
6
heart left ventricle
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
pancreas
6
smooth muscle cell
6
squamous cell lung carcinoma
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
body of pancreas
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
macrophage
5
mammary gland epithelial cell
5
melanoma cell
5
osteosarcoma
5
ovary
5
pancreatic ductal cell
5
regulatory T cell
5
small intestine
5
thymus
5
thyroid gland
5
transverse colon
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
caudate nucleus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
heart
4
heart right ventricle
4
iPSC derived cell line
4
kidney
4
layer of hippocampus
4
mammary epithelial cell
4
mesenchymal stem cell
4
neuronal stem cell
4
osteoblast
4
pancreatic acinar cell
4
pancreatic delta cell
4
prostate gland
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
skeletal muscle tissue
4
upper lobe of left lung
3
22Rv1
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
HAP-1
3
HCT116
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
brain
3
breast epithelium
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lung
3
lymphoblast
3
lymphoblastoid cell line
3
mesendoderm
3
naive T cell
3
neutrophil
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
placenta
3
substantia nigra
3
temporal lobe
3
testis
3
tibial nerve
3
trophoblast cell
3
type B pancreatic cell
2
A673
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
H7-hESC
2
HCT-116 cell
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HuH-7
2
IMR-90
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
Mantle cell lymphoma
2
NCCIT cell
2
NT2-D1 cell
Organ
4
connective tissue
1
embryo
Life stage
embryonic
1
adult
Date released
2
March, 2020
1
February, 2021
1
May, 2021
1
September, 2022
Software used
2
nospecificsoft_customcode
1
abc
1
macs
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
skeletal muscle tissue
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR181ORU
released
Annotation file set
: A target gene prediction annotation in Human Trophoblast of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP