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Citing CMDGA
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Annotation type
1690
candidate regulatory elements
1343
target gene predictions
959
histone modifications
933
chromatin state
881
accessible chromatin
815
binding sites
634
gene expression
167
differential activity
144
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
4
sQTL
3
meQTL
3
other
3
variant to gene
1
representative DNase hypersensitivity sites
Annotation Category
2
Others
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
1
tissue
Biosample term
1
Pancreatic islets
1
myocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
Life stage
1
adult
Date released
1
February, 2021
1
May, 2020
1
May, 2021
1
November, 2019
Software used
1
altius-index
1
limix
1
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
month_released!
August, 2020
August, 2021
organ_slims!
thymus
Showing 4 of 4 results
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Download
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048FDK
released
Annotation file set
: Test annotation
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR942GKV
released
Annotation file set
: Annotation for gene TSS
Lab:
Kyle Gaulton, UCSD
Project:
AMP