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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
0
other
Annotation Category
1
Target gene links
Annotation type Category
pCHi-C
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
20
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
19
heart
16
adrenal gland
16
brain
16
muscle of arm
15
lung
15
placenta
15
small intestine
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
endothelial cell
7
smooth muscle cell
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
lymphocyte
6
mononuclear cell
6
olfactory receptor cell
6
spleen
5
body of pancreas
5
gastrocnemius medialis
5
heart left ventricle
5
keratinocyte
5
muscle of trunk
5
natural killer cell
5
ovary
5
psoas muscle
5
sigmoid colon
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T cell
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
mammary gland epithelial cell
4
neural progenitor cell
4
pancreas
4
pancreatic delta cell
4
regulatory T cell
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
aorta
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
foreskin fibroblast
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
macrophage
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
OCI-LY7
2
PC-9
2
Panc1
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
memory B cell
2
mesendoderm
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
type II pneumocyte
2
urinary bladder
2
uterus
2
vagina
1
8988T
Organ
1
bone element
1
bone marrow
Date released
1
January, 2021
Software used
1
cicero
Lab
1
Kyle Gaulton, UCSD
Project
1
T1D
RFA
1
T1D
annotation_type_category!
pCHi-C
relevant_life_stage!
child
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D