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Citing CMDGA
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Annotation type
1554
candidate regulatory elements
1269
target gene predictions
965
histone modifications
875
accessible chromatin
862
chromatin state
715
binding sites
664
gene expression
164
differential activity
159
eQTL
126
variant allelic effects
62
Fine-mapped variants
5
hQTL
5
sQTL
4
caQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
2
Others
1
Genetic variant effects
Annotation type Category
1
ChIP-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
1
Pancreatic islets
1
naive thymus-derived CD4-positive, alpha-beta T cell
Life stage
1
adult
Date released
1
May, 2020
1
May, 2021
1
November, 2019
Software used
1
limix
1
macs
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
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October, 2022
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Download
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048FDK
released
Annotation file set
: Test annotation
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR942GKV
released
Annotation file set
: Annotation for gene TSS
Lab:
Kyle Gaulton, UCSD
Project:
AMP