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Citing CMDGA
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Annotation type
888
histone modifications
838
target gene predictions
732
candidate regulatory elements
715
accessible chromatin
689
binding sites
573
gene expression
432
chromatin state
162
differential activity
89
variant allelic effects
56
eQTL
5
hQTL
4
caQTL
3
meQTL
3
sQTL
2
other
1
representative DNase hypersensitivity sites
Annotation Category
3
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
RNA-seq
1
DNase-seq
Available data
1
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
tissue
1
in vitro differentiated cells
Biosample term
1
monocyte
1
myocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Life stage
3
adult
Date released
3
May, 2021
1
February, 2021
Software used
3
limix
3
sqtlseeker
1
altius-index
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
tissue
month_released!
October, 2022
organ_slims!
spinal cord
Showing 4 of 4 results
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FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP