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Schema
Citing CMDGA
Clear Filters
Annotation type
88
accessible chromatin
72
gene expression
67
target gene predictions
60
candidate regulatory elements
45
differential activity
42
chromatin state
21
binding sites
19
eQTL
18
variant allelic effects
12
histone modifications
11
Fine-mapped variants
3
caQTL
2
sQTL
2
variant to gene
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
1
Expression arrays
Available data
2
tsv
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
islet of Langerhans
Organ
4
pancreas
0
blood vessel
Life stage
1
adult
Date released
3
March, 2023
1
August, 2021
Software used
3
qTLtools
1
matrix-eQTL
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
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Showing 4 of 4 results
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP