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Annotation type
2637
pQTL
677
gene expression
172
differential activity
126
eQTL
17
variant allelic effects
12
Fine-mapped variants
8
accessible chromatin
7
caQTL
4
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
Available data
2
csv
File set status
4
released
Genome assembly (visualization)
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
2
articular chondrocyte
1
islet of Langerhans
1
monocyte
Organ
2
connective tissue
1
pancreas
Life stage
3
adult
Date released
2
January, 2025
1
March, 2023
1
May, 2021
Software used
3
qTLtools
1
limix
1
sqtlseeker
Lab
2
AMP-T2D consortium
2
Doug Phanstiel, UNC
Project
2
AMP
2
community
Collection Tags
1
BLUEPRINT
1
CMDGA
1
T1D
RFA
2
AMP
2
community
assembly!
hg19
Showing 4 of 4 results
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FileSet
DSR020DGY
released
Annotation file set
: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR302PZQ
released
Annotation file set
: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP