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Annotation type
1709
candidate regulatory elements
1357
target gene predictions
976
histone modifications
944
chromatin state
905
accessible chromatin
816
binding sites
124
variant allelic effects
72
Fine-mapped variants
63
eQTL
12
gene expression
6
caQTL
5
hQTL
3
meQTL
3
pQTL
3
sQTL
2
other
2
variant to gene
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
3
adult
Date released
2
May, 2021
1
August, 2021
Software used
2
limix
2
sqtlseeker
1
matrix-eQTL
Lab
3
AMP-T2D consortium
Project
3
AMP
Collection Tags
2
BLUEPRINT
2
T1D
1
AMP
1
T2DKP
RFA
3
AMP
Showing 3 of 3 results
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FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP