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Citing CMDGA
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Annotation type
1710
candidate regulatory elements
1310
target gene predictions
944
chromatin state
895
accessible chromatin
891
histone modifications
815
binding sites
656
gene expression
167
differential activity
167
eQTL
140
variant allelic effects
13
caQTL
4
sQTL
4
variant to gene
3
hQTL
3
other
3
pQTL
2
Fine-mapped variants
2
meQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
islet of Langerhans
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
pancreas
Life stage
3
adult
Date released
2
May, 2021
1
August, 2021
1
March, 2023
Software used
2
limix
2
sqtlseeker
1
matrix-eQTL
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
monocyte
month_released!
July, 2020
March, 2020
Showing 4 of 4 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP