Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
88
histone modifications
40
candidate regulatory elements
28
accessible chromatin
27
gene expression
25
target gene predictions
22
chromatin state
18
eQTL
3
binding sites
3
sQTL
2
Fine-mapped variants
2
hQTL
2
variant to gene
1
meQTL
1
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
pancreas
Life stage
2
adult
Date released
1
August, 2021
1
March, 2023
1
May, 2021
Software used
1
limix
1
matrix-eQTL
1
qTLtools
1
sqtlseeker
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
right kidney
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP