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Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 913accessible chromatin
  • 817binding sites
  • 689gene expression
  • 186eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 4sQTL
  • 4variant to gene
  • 2other
  • 1representative DNase hypersensitivity sites
Annotation Category
  • 4Genetic variant effects
Annotation type Category
  • 4RNA-seq
  • 1Expression arrays
Available data
  • 2csv
  • 1bed bed3+
File set status
  • 4released
Genome assembly (visualization)
  • 1hg19
Organism
  • 4Homo sapiens
Biosample type
  • 2primary cell
  • 2tissue
Biosample term
  • 2articular chondrocyte
  • 2islet of Langerhans
Organ
  • 2connective tissue
  • 2pancreas
Life stage
  • 3adult
Date released
  • 2January, 2025
  • 1August, 2021
  • 1March, 2023
Software used
  • limix
  • 3qTLtools
  • 3sqtlseeker
  • 1matrix-eQTL
Lab
  • 2AMP-T2D consortium
  • 2Doug Phanstiel, UNC
Project
  • 2AMP
  • 2community
Collection Tags
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  • 1CMDGA
  • 1T2DKP
RFA
  • 2AMP
  • 2community
software_used.software.name!
  • limix

Showing 4 of 4 results

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  • FileSet

    DSR020DGY

    released

    Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
    Lab: Doug Phanstiel, UNC
    Project: community
  • FileSet

    DSR302PZQ

    released

    Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
    Lab: Doug Phanstiel, UNC
    Project: community
  • FileSet

    DSR615JGJ

    released

    Annotation file set: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR276ICN

    released

    Annotation file set: sQTL annotation of islet of Langerhans from PMID:25201977
    Lab: AMP-T2D consortium
    Project: AMP
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