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Annotation type
2640
pQTL
1709
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
913
accessible chromatin
817
binding sites
689
gene expression
186
eQTL
172
differential activity
141
variant allelic effects
84
Fine-mapped variants
13
caQTL
4
sQTL
4
variant to gene
2
other
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
1
Expression arrays
Available data
2
csv
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
articular chondrocyte
2
islet of Langerhans
Organ
2
connective tissue
2
pancreas
Life stage
3
adult
Date released
2
January, 2025
1
August, 2021
1
March, 2023
Software used
limix
3
qTLtools
3
sqtlseeker
1
matrix-eQTL
Lab
2
AMP-T2D consortium
2
Doug Phanstiel, UNC
Project
2
AMP
2
community
Collection Tags
1
AMP
1
CMDGA
1
T2DKP
RFA
2
AMP
2
community
software_used.software.name!
limix
Showing 4 of 4 results
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FileSet
DSR020DGY
released
Annotation file set
: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR302PZQ
released
Annotation file set
: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP