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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
2
Target gene links
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
stem cell
Biosample term
54
HeLa-S3
37
H1-hESC
22
K562
19
HFFc6
18
A549
13
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
9
B cell
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
adipose tissue
7
adrenal gland
7
liver
7
lymphocyte
7
psoas muscle
6
H9
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
6
spleen
6
stomach
5
MCF-7
5
heart left ventricle
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T cell
4
aorta
4
body of pancreas
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
iPSC derived cell line
4
natural killer cell
4
ovary
4
pancreas
4
regulatory T cell
4
small intestine
4
thyroid gland
4
transverse colon
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
heart
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
lung
3
mammary gland epithelial cell
3
naive T cell
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skeletal muscle tissue
3
thymus
3
tibial nerve
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
angular gyrus
2
ascending aorta
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
epithelial cell of prostate
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
frontal cortex
2
keratinocyte
2
kidney
2
kidney tubule cell
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
macrophage
2
megakaryocyte
2
mesenchymal stem cell
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
skeletal muscle myoblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
testis
2
thoracic aorta
2
tibial artery
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELR
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
HAP-1
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HuH-7
1
HuH-7.5
1
Human Mesenchymal Cell derived Adipocytes
Organ
2
connective tissue
Life stage
1
adult
embryonic
Date released
1
March, 2020
1
September, 2022
Software used
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
accessible chromatin
month_released!
February, 2020
relevant_life_stage!
embryonic
software_used.software.name!
abc
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP